Mid-Year 1 General Assembly Meeting

Day 0 (Thursday, Sep. 18, 2014)

Hackathon at School of Chemical Engineering, National Technical University of Athens.

GO-based descriptor calculation (Georgia, Egon, Bart) (other ontologies too)
NanoWiki data enrichment with BAO annotation (Egon, Nina, Bart)
Extensive API discussion (Nina, Harry, Nikos, Philip)
RRgres progress, meta-files, consider SDK-like package (Georgia, Egon)
NCBO ontology tool by UM, progress & contribution by NTUA (Egon, Georgia, Bart)
Pathway analysis (Bart, Egon, Georgia) (NTUA contributions)

Day 1 (Friday, Sep. 19, 2014, 9:00-18:30)

Titania Hotel, Athens, Greece

1. Review of Specifications - Markus (9:00-9:45)
2. Prototype presentations (each 15+15 pres. & discussion) (9:45-12:30)
2.1. Ontology tool (Janna) (9:45-10:15)
2.2. Corona Modeling (Philip, Georgia) (10:15-10:45)
2.2.1. Protein/GO descriptors
2.2.2. R-script for building QSAR models
2.2.3. Communication between modeling and database services
2.2.4. PMML support
Coffee Break (10:45-11:15)
2.3. Integrated Data Set (Nina) (11:15- 12:30 break for lunch)
Lunch (12:30-13:30)
2.3 Integrated Data Set, cont. (Nina) (13:30-14:30)
3. Extensive API discussion (14:30-18:30)

Dinner at Rozalia tavern

Day 2 (Saturday, Sep. 20, 2014, 9:00-17:30)

Titania Hotel, Athens, Greece

1. Use Case Implementation Discussion / Paper prototyping (9:00-13:00)
Presentation on use cases/paper prototyping (Markus) (9:00-10:00)
Break-outs – Groups working on use cases (10:00-13:00)

Lunch (13:00-14:00)

2. Preparation for M12 deliverables (14:00-16:00)
2.1. D1.2 (UM) Use Cases and Test Suite (M12) (T1.2,T1.3,T1.4)
2.2. D2.3 (EMBL-EBI) Ontology initial release (M12) (T2.4)
2.3. D3.1 (IDEA) Technical Specification and initial implementation of the protocol and data management web services (M12) (T3.1,T3.2,T3.3)
2.4. D4.1 (NTUA) Analysis and Modelling Specifications (M12) (T4.1)
2.5. D5.3 (UM) User application for importing NanoWiki data (M12) (T5.3,T5.5)
2.6. D6.1 (VTT) eNanoMapper Year 1 Dissemination Report (M12) (T6.1,T6.2,T6.3)
2.7. D7.2 (DC) Year 1 Meeting including review (M13) (T7.2)
3. Wrap-up (16:00-17:30)

Dinner at Dia Tayta restaurant